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Abstract Water quality, chlorophyll a, phytoplankton, proto and mezo-zooplankton abundance were spatiotemporally evaluated in an estuary receiving effluents from a Pacific white shrimp Litopenaeus vannamei farm in Patos Lagoon estuary, Southern Brazil. Samples were taken before (BD) and; 1 day (1 PD) 5 days (5 PD), 10 days (10 PD), 20 days (20 PD) and 30 days (30 PD) after the effluents discharge. Some water quality parameters were affected by the effluents discharge; however, these changes were restricted to a distance of 20 m from the effluent discharge channel for a period of 5 days. The microbial community was dominated by chlorophyceae, followed by diatoms, cyanobacteria and ciliates. There was an increase in the abundance of different groups on the 1 PD sampling compared to BD. The zooplankton abundance was low in practically all sites, except for 30 PD sampling. The meso-zooplanktonic organisms were represented by copepods, mostly Acartia tonsa. Despite some effects on water quality and phytoplankton and protozooplankton abundance until 5 PD sampling, these alterations dissipated in a short period of time. We conclude that the environment quickly assimilated the effluents discharge, and the water quality parameters remained within the limits stipulated by standard guidelines

Plankton and water quality variability in an estuary before and after the shrimp farming effluents: possible impacts and regeneration