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Botnets have evolved to become one of the most serious threats to the Internet and there is substantial research on both botnets and botnet detection techniques.  This analysis reviewed the history of botnets and botnet detection techniques. The analysis showed traditional botnet detection techniques rely on passive techniques, primarily honeypots, and that honeypots are not effective at detecting peer-to-peer and other decentralized botnets. Furthermore, the detection techniques aimed at decentralized and peer-to-peer botnets focus on detecting communications between the infected bots.  However, the increased use of obfuscation and encryption has significantly impacted the ability to detect botnet communications.

A Survey of Botnet Detection Techniques by Command and Control Infrastructure