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Genome wide expression profiling of  Sphingobium indicum  B90A revealed induction of  lin  genes,  linA  and  linB,  involved in dechlorination of hexachlorocyclohexane (HCH), in the presence of all four isomers of HCH. Supporting proteomics data, the qPCR and promoter assay showed upregulation of  linA  transcription in the presence of HCH isomers. Analysis of the upstream region of the  linA  gene revealed the existence of the GntR binding site overlapping the -10 hexamer of the putative promoter motif. As GntR is a known transcription repressor its dissociation from the  linA  promoter is expected to induce  lin  genes in the presence of HCH isomers. Comparison of  in situ  and in-culture proteomics indicated expression  lin  genes at the dumpsite, an indication for the  in situ  HCH degradation.

Proteomics of Sphingobium indicum B90A for a deeper understanding of hexachlorocyclohexane (HCH) bioremediation