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Alseodaphne  is a genus of timber trees (ca. 40 spp.) belonging to the  Persea  group of the Lauraceae. It is widely distributed in tropical Asia, but is often confused with  Dehaasia  and  Nothaphoebe , and the systematics of the genus is unclear. Here, the complete chloroplast genome sequences of  A. semecarpifolia  will be reported, the type species of  Alseodaphne , and two China-endemic species,  A. gracilis  and  A. huanglianshanensis . The three plastomes were 153 051 bp, 153 099 bp and 153 070 bp, respectively. Comparative genomic analyses indicate that the three  Alseodaphne  plastomes have similar genome size and those are very different with previously published plastomes of Lauraceae in length. The length difference is directly caused by inverted repeats expansion/contraction. Four highly variable loci including  psbD-trnM ,  ndhF - rpl32 ,  rpl32 - trnL  and  ycf1  among the three  Alseodaphne  species were identified as useful plastid candidate barcodes for  Alseodaphne  and Lauraceae species. Phylogenetic analyses based on 12 complete plastomes of Lauraceae species confirm a monophyletic  Persea  group comprising species of  Alseodaphne ,  Phoebe ,  Persea  and  Machilus .

Complete plastid genome sequences of three tropical Alseodaphne trees in the family Lauraceae