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The Canadian COVID-19 Genomics Network (CanCOGeN) is performing genomic surveillance of circulating SARS-CoV-2 in Canada to track its spread, monitor for variants of concern (VOCs) that might impact transmissibility or disease severity, assist in outbreak investigations, and assess the impact of public health interventions. Recent reports of emerging VOCs with enhanced transmissibility have been reported in the UK and South Africa. The potential for rapid spread of these variants affirms the need for ongoing and enhanced genomic surveillance in Canada and worldwide. In this guidance document, we set out the national priorities for genomic surveillance, including targeted surveillance of existing and emerging VOCs.

Canadian national COVID-19 genomics surveillance priorities for existing and emerging variants of concern