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The mitochondrial genome of Mesomelena mesomelaena (Loew, 1848) is the first to be sequenced in the flesh fly subfamily Miltogramminae (Diptera: Sarcophagidae). The 14,559 bp mitogenome contains 37 typical metazoan mitochondrial genes: 13 protein-coding genes, two ribosomal RNA genes and 22 transfer RNA genes, with the same locations as in the insect ground plan. All the protein-coding genes have the start codon ATN, except for cox1 (TCG). Eight protein-coding genes have the stop codon TAA, while the remaining five have the stop codon T (cox1, cox2, nad5, and nad4) or TAG (cytb). Synonymous and non-synonymous substitution rates (Ks and Ka) for each protein-coding gene indicate that these genes evolved primarily under negative (or purifying) selection (Ka < Ks). Phylogeny of Sarcophagidae is proposed based on all the sarcophagid mitogenomes in GenBank, and the subfamily topology is reconstructed as (Sarcophaginae (Paramacronychiinae, Miltogramminae)).

First mitogenome for the subfamily Miltogramminae (Diptera: Sarcophagidae) and its phylogenetic implications