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In these proceedings we review the flavour phenomenology of two-Higgs-doubletmodels (2HDMs) and connect the results to the decoupling limit of the MSSM. Wefirst study the impact of FCNC constraints on the allowed parameter space ofthe 2HDM and examine how recent deviations from the SM expectations in tauonic$B$ decays (observed by BABAR) can be explained in a 2HDM with generic flavourstructure (of type III) with sizable flavour violation in the up-sector.Afterwards, we discusses the matching of the MSSM on the 2HDM of type III. Herewe focus on the two-loop SQCD corrections to the Higgs-quark-quark couplings.

Higgs mediated Flavour Violation in 2HDMs and the MSSM -- An Overview