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In this study Illumina MiSeq was performed to investigate microbial diversity in soil, leaves, grape, grape juice and wine. A total of 1,043,102 fungal Internal Transcribed Spacer (ITS) reads and 2,422,188 high quality bacterial 16S rDNA sequences were used for taxonomic classification, revealed five fungal and eight bacterial phyla. At the genus level, the dominant fungi were  Ascomycota ,  Sordariales ,  Tetracladium  and  Geomyces  in soil,  Aureobasidium  and  Pleosporaceae  in grapes leaves,  Aureobasidium  in grape and grape juice. The dominant bacteria were  Kaistobacter ,  Arthrobacter ,  Skermanella  and  Sphingomonas  in soil,  Pseudomonas ,  Acinetobacter  and  Kaistobacter  in grape and grapes leaves, and  Oenococcus  in grape juice and wine. Principal coordinate analysis showed structural separation between the composition of fungi and bacteria in all samples. This is the first study to understand microbiome population in soil, grape, grapes leaves, grape juice and wine in Xinjiang through High-throughput Sequencing and identify microorganisms like  Saccharomyces cerevisiae  and  Oenococcus  spp. that may contribute to the quality and flavor of wine.

High-throughput sequencing of microbial community diversity in soil, grapes, leaves, grape juice and wine of grapevine from China