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Simple elastic network models of DNA were developed to reveal thestructure-dynamics relationships for several nucleotide sequences. First, wepropose a simple all-atom elastic network model of DNA that can explain theprofiles of temperature factors for several crystal structures of DNA. Second,we propose a coarse-grained elastic network model of DNA, where each nucleotideis described only by one node. This model could effectively reproduce thedetailed dynamics obtained with the all-atom elastic network model according tothe sequence-dependent geometry. Through normal-mode analysis for thecoarse-grained elastic network model, we exhaustively analyzed the dynamicfeatures of a large number of long DNA sequences, approximately $\sim 150$ bpin length. These analyses revealed positive correlations between thenucleosome-forming abilities and the inter-strand fluctuation strength ofdouble-stranded DNA for several DNA sequences.

Simple Elastic Network Models for Exhaustive Analysis of Long Double-Stranded DNA Dynamics with Sequence Geometry Dependence