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The  Hapalogenys  genus was the most controversial and problematic in phylogenetic position of Percoidei. In this study, we rechecked the taxonomic status of  Hapalogenys  in Percoidei using complete mitochondrial genome data. We purposefully added a new complete mitochondrial sequence from chosen species of  Hapalogenys  and conducted phylogenetic analyses using a large complete mitochondrial data set. The resultant tree topologies were congruent from partitioned Bayesian and Maximum-likelihood methods. The results indicated that  Hapalogenys  was distantly related to Haemulidae and could be removed from Haemulidae. The results supported the  Hapalogeny  was upgraded to a family rank titled Hapalogenyidae, and it should be recognized in a separate family of Hapalogenyidae. A relaxed molecular-clock Bayesian analysis indicated that the divergence times of Perciformes groups had a much older than the available old fossil records. The origin of the common ancestral lineage of Perciformes fish was estimated in the late Jurassic about 149 Myr ago.

plos one

A Mitogenomic Perspective on the Phylogenetic Position of the Hapalogenys Genus (Acanthopterygii: Perciformes) and the Evolutionary Origin of Perciformes