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We present a genome assembly from a clonal population of  Eimeria tenella  Houghton parasites (Apicomplexa; Conoidasida; Eucoccidiorida; Eimeriidae). The genome sequence is 53.25 megabases in span. The entire assembly is scaffolded into 15 chromosomal pseudomolecules, with complete mitochondrion and apicoplast organellar genomes also present.

The complete genome sequence of Eimeria tenella (Tyzzer 1929), a common gut parasite of chickens