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PanFunPro stands for PAN-genome analysis based on FUNctional PROfiles. PanFunPro is a tool forpan-genome analysis. It has several following functionalities – (1) homology detection and genomefunctional characterization by three HMM-collections, (2) pan-/core genome calculation within theset of proteomes, (3) pairwise pan-/core-genome analysis, (4) specific genome calculation for differentsubsets of genomes as well as pairwise analysis of specific proteomes, (5) basic statistics forthe output genes from the pan-/core-/specific-genome calculation, (6) analysis of available GOinformation for the output genes from the pan-/core-/specific-genome calculation. PanFunPro is provided in two parts: PanFunPro2profiles.pl and PanFunPro2apply.p

PanFunPro: PAN-genome analysis based on FUNctional PROfiles