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We report results showing that thermally-induced openings of double strandedDNA coincide with the location of functionally relevant sites fortranscription. Investigating both viral and bacterial DNA gene promotersegments, we found that the most probable opening occurs at the transcriptionstart site. Minor openings appear to be related to other regulatory sites. Ourresults suggest that coherent thermal fluctuations play an important role inthe initiation of transcription. Essential elements of the dynamics, inaddition to sequence specificity, are nonlinearity and entropy, provided bylocal base-pair constraints

Sequence-specific thermal fluctuations identify start sites for DNA transcription