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Pseudomonas  has the highest number of species out of any genus of Gram-negative bacteria and is phylogenetically divided into several groups. The  Pseudomonas putida  phylogenetic branch includes at least 13 species of environmental and industrial interest, plant-associated bacteria, insect pathogens, and even some members that have been found in clinical specimens. In the context of the  Genomic Encyclopedia of Bacteria and Archaea  project, we present the permanent, high-quality draft genomes of the type strains of 3 taxonomically and ecologically closely related species in the  Pseudomonas putida  phylogenetic branch:  Pseudomonas fulva  DSM 17717 T ,  Pseudomonas parafulva  DSM 17004 T  and  Pseudomonas cremoricolorata  DSM 17059 T . All three genomes are comparable in size (4.6 – 4.9 Mb), with 4,119 – 4,459 protein-coding genes. Average nucleotide identity based on BLAST comparisons and digital genome-to-genome distance calculations are in good agreement with experimental DNA-DNA hybridization results. The genome sequences presented here will be very helpful in elucidating the taxonomy, phylogeny and evolution of the  Pseudomonas putida  species complex.   Electronic supplementary material  The online version of this article (doi:10.1186/s40793-016-0178-2) contains supplementary material, which is available to authorized users.

standards in genomic sciences

High quality draft genome sequences of Pseudomonas fulva DSM 17717T, Pseudomonas parafulva DSM 17004T and Pseudomonas cremoricolorata DSM 17059T type strains