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Objective  This study aimed to determine the prevalence of  A. baumannii  in children aged less than 1 year admitted with a clinical diagnosis of whooping cough.    Results  A total of 225 nasopharyngeal samples from children under 1 year old hospitalized with clinical diagnosis of whooping cough were studied from January 2010 to July 2012. The presence of  A. baumannii  was detected in 20.89% (47/225) of the nasopharyngeal swab samples. Among the 47 patients with  A. baumannii : 5 were diagnosed with  A. baumannii  monoinfection, 17 co-infection with bacteria, 7 co-infection with virus and 18 co-infection with bacteria + virus. It was observed that 51.6% (116/225) were children between 29 days and 3 months old, this same group had the highest overall prevalence with 53.3%. The most common co-infecting pathogens were  Bordetella pertussis  in 55.3%,  Adenovirus  in 42.6% and  Mycoplasma pneumoniae  in 23.4%.    Supplementary Information  The online version contains supplementary material available at 10.1186/s13104-021-05826-y.

Community acquired Acinetobacter baumannii in pediatric patients under 1 year old with a clinical diagnosis of whooping cough in Lima, Peru