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Objectives  To decipher the diversity of unique ectoine-coding housekeeping genes in the genus  Halomonas .    Results  In  Halomonas , 1,4,5,6-Tetrahydro-2-methyl-4-pyrimidinecarboxylic acid has a crucial role as a stress-tolerant chaperone, a compatible solute, a cell membrane stabilizer, and a reduction in cell damage under stressful conditions. Apart from the current 16S rRNA biomarker, it serves as a blueprint for identifying  Halomonas  species.  Halomonas elongata  1H9 was found to have 11 ectoine-coding genes. The presence of a superfamily of conserved ectoine-coding among members of the genus  Halomonas  was discovered after genome annotations of 93  Halomonas  spp. As a result of the inclusion of 11 single copy ectoine coding genes in 32  Halomonas  spp., genome-wide evaluations of ectoine coding genes indicate that 32  Halomonas  spp. have a very strong association with  H. elongata  1H9, which has been proven evidence-based approach to elucidate phylogenetic relatedness of ectoine-coding child taxa in the genus  Halomonas . Total 32  Halomonas  species have a single copy number of 11 distinct ectoine-coding genes that help  Halomonas  spp., produce ectoine under stressful conditions. Furthermore, the existence of the Universal stress protein (UspA) gene suggests that  Halomonas  species developed directly from primitive bacteria, highlighting its role during the progression of microbial evolution.    Supplementary Information  The online version contains supplementary material available at 10.1186/s13104-021-05689-3.

bmc research notes

The diversity of unique 1,4,5,6-Tetrahydro-2-methyl-4-pyrimidinecarboxylic acid coding common genes and Universal stress protein in Ectoine TRAP cluster (UspA) in 32 Halomonas species