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Objective  The objective of this study was to characterize the composition of the gut microbiota in type 2 Diabetes Mellitus (T2DM) patients with adequate and inadequate metabolic control, and its relationship with fiber consumption.    Results  A total of 26 patients with type 2 diabetes mellitus (T2DM) were enrolled, of which 7 (26.9%) cases had adequate metabolic control (HbA1c < 7%) and 19 (73.1%) inadequate metabolic control (HbA1c ≥ 7%). It was observed that among patients with controlled T2DM, 2 (28.6%) cases presented good intake of fiber and 5 (71.4%) cases a regular intake. In contrast, in patients with uncontrolled T2DM, 13 (68.4%) patients reported a regular intake and 6 (31.6%) a poor intake. In relation to the identification of the gut microbiota, both groups presented a similar characterization. There were differences in the population of bacteria identified in both groups, however, the results were not statistically significant. The most frequently identified bacteria in controlled and uncontrolled T2DM patients were  Prevotella  (71.4% vs 52.6%), followed by  Firmicutes  (71.4% vs 42.1%),  Proteobacteria  (71.4% vs 36.8%) and  Bacteroidetes  (57.1% vs 37.8%). On the other hand,  Fusobacterium, Actinobacteria  were not identified in either of the two groups of study.    Supplementary Information  The online version contains supplementary material available at 10.1186/s13104-021-05655-z.

Characterization of the gut microbiota in diabetes mellitus II patients with adequate and inadequate metabolic control