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Objectives   Mycolicibacterium peregrinum , a rapidly growing mycobacterial species, can opportunistically infect humans and other animals. Although  M. peregrinum  infections in animals have been reported, the infection sources are unknown, as is information on its virulence and drug resistant genes, which limits our current understanding of this bacterium. To address this knowledge gap, we obtained draft genome sequences for two  M. peregrinum  isolates; one from a case of pig lymphadenitis and one from the pig farm’s soil.    Data description  We report here the draft genome sequences of  M. peregrinum  isolates 131_1 and 138 (6,451,733-bp and 6,479,047-bp). They were isolated from a pig with mesenteric lymph node lymphadenitis and from soil on the Japanese farm where the pig was reared. A sequence alignment identity score of 100% was obtained by in silico DNA–DNA hybridization of the two isolates, while 98.28% (isolate 131_1) and 98.27% (isolate 138) scores were recorded for hybridization with a human isolate. Both isolates carry  arr -1,  AAC (2′)-Ib,  RbpA ,  mtrA  and  tap  drug-resistance genes. Isolates 131_1 and 138 carry 234 and 236 putative virulence genes, respectively. Therefore, environment  M. peregrinum  is potentially drug resistant and can cause swine lymphadenitis. Our data provides valuable new information for future studies on nontuberculous mycobacteria.

Draft genome sequences of Mycolicibacterium peregrinum isolated from a pig with lymphadenitis and from soil on the same Japanese pig farm