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Background  Despite the progress in neuroblastoma therapies the mortality of high-risk patients is still high (40–50%) and the molecular basis of the disease remains poorly known. Recently, a mathematical model was used to demonstrate that the network regulating stress signaling by the c-Jun N-terminal kinase pathway played a crucial role in survival of patients with neuroblastoma irrespective of their MYCN amplification status. This demonstrates the enormous potential of computational models of biological modules for the discovery of underlying molecular mechanisms of diseases.    Results  Since signaling is known to be highly relevant in cancer, we have used a computational model of the whole cell signaling network to understand the molecular determinants of bad prognostic in neuroblastoma. Our model produced a comprehensive view of the molecular mechanisms of neuroblastoma tumorigenesis and progression.    Conclusion  We have also shown how the activity of signaling circuits can be considered a reliable model-based prognostic biomarker.    Reviewers  This article was reviewed by Tim Beissbarth, Wenzhong Xiao and Joanna Polanska. For the full reviews, please go to the Reviewers’ comments section.    Electronic supplementary material  The online version of this article (10.1186/s13062-018-0219-4) contains supplementary material, which is available to authorized users.

Models of cell signaling uncover molecular mechanisms of high-risk neuroblastoma and predict disease outcome