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Objectives Mirabilis jalapa  L. and  Bougainvillea spectabilis  are two  Mirabilis  species known for their ornamental and pharmaceutical values. The organelle genomes are highly conserved with a rapid evolution rate making them suitable for evolutionary studies. Therefore, mitochondrial and chloroplast genomes of  B. spectabilis  and  M. jalapa  were sequenced to understand their evolutionary relationship with other angiosperms. Data description Here, we report the complete mitochondrial genomes of  B. spectabilis  and  M. jalapa  (343,746 bp and 267,334 bp, respectively) and chloroplast genomes of  B. spectabilis  (154,520 bp)  and M. jalapa  (154,532 bp) obtained from Illumina NovaSeq. The mitochondrial genomes of  B. spectabilis  and  M. jalapa  consisted of 70 and 72 genes, respectively. Likewise, the chloroplast genomes of  B. spectabilis  and  M. jalapa  contained 131 and 132 genes, respectively. The generated genomic data will be useful for molecular characterization and evolutionary studies.

Sequencing the organelle genomes of Bougainvillea spectabilis and Mirabilis jalapa (Nyctaginaceae)