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We describe a new MR-based attenuation correction (MRAC) method for neurological studies performed using integrated PET/MR scanners. The method, combining the advantages of image segmentation and atlas-based approaches to generate a high-resolution template, is based on the widely available SPM8 software and provides robust and accurate linear attenuation coefficients (LACs) for head while requiring minimal user interaction.  Atlas generation: 3T MR and CT images from 15 glioblastoma subjects were used to generate the high-resolution atlas. MR images were segmented into 6 tissue classes: GM, WM, CSF, soft tissue, bone and air)[1]. Tissue classes were then coregistered using an iterative diffeomorphic image registration algorithm [2] to form the template.  Atlas validation: The template was validated on 16 subjects. SyN [3] and IRTK [4], considered state-of-the-art for non-rigid image registration[5], were used for comparison. Final attenuation maps were created from the warped CT atlas following [6]. PET images were then reconstructed using the proposed methods as well as the manufacturer’s built-in method (dual-echo Dixon-VIBE sequence) [7] and compared to the gold standard CT-based attenuation correction (CTAC).  The qualitative and quantitative analysis of the attenuation maps revealed that the SPM8-based method produces very robust results (Figure ​(Figure1).1). In terms of the PET data quantification, we observed improvements of > 70% compared to the VIBE-based method (Table ​(Table11 and Figure ​Figure2).2). When compared to SyN-based image registration, the SPM8 approach showed improved global results on the brain area (Figures ​(Figures11 and ​and22).    Figure 1  Comparison of LACs from a validation subject for our proposed method (A), the SyN method (B) and the manufacturer’s built-in Dixon method (C) to the gold standard CTAC (D). Image differences with respect to the gold standard CTAC of our method ...      Table 1  Summary of voxel- and ROI-based results between our method (atlas) and the current manufacturer’s method (Dixon)      Figure 2  PET images from a validation subject reconstructed with our proposed method (A), with the SyN method (B) and with the manufacturer’s built-in Dixon method (C), compared with the gold standard CTAC (D). Relative changes (in % with respect to gold ...    We presented a new MRAC technique for brain images acquired on simultaneous PET/MR scanners. The new approach relies on segmentation- and atlas-based features to provide robust and more accurate LACs than using state-of-art non-rigid image registration while avoiding sophisticated user input or interaction.

New SPM8-based MRAC method for simultaneous PET/MR brain images: comparison with state-of-the-art non-rigid registration methods