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Background Current technological limitations hinder the measurement of certain core metabolites, including glyceraldehyde-3phosphate and erythrose-4-phsophate. For measurable metabolites, absolute concentration data sets are not always thermodynamically consistent. The use of a previously underappreciated thermodynamic relationship, however, provides a way to remedy these shortcomings. We develop a novel approach to integrate metabolite concentrations, reaction fluxes, and reaction free energies (ΔrG) and apply it across four organisms: E. coli, C. acetobutylicum, Baker’s yeast, and mouse renal epithelial cells.

Comprehensive quantitation of metabolite concentrations, gross reaction fluxes, and reaction free energies across cells from four organisms