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The placozoan  Trichoplax adhaerens  has a compact genome with many primitive eumetazoan characteristics. In order to gain a better understanding of its genome architecture, we conducted a detailed analysis of repeat content in this genome. The transposable element (TE) content is lower than that of other metazoans, and the few TEs present in the genome appear to be inactive. A new phylogenetic clade of the  gypsy -like LTR retrotransposons was identified, which includes the majority of  gypsy -like elements in  Trichoplax . A particular microsatellite motif (ACAGT) exhibits unexpectedly high abundance, and also has strong association with its nearby genes.    Reviewers  This article was reviewed by Dr. Jerzy Jurka and Dr. I. King Jordan.

Genome-wide analysis of transposable elements and tandem repeats in the compact placozoan genome