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Methods Drug resistance is predicted for all FDA approved HIV-1 protease inhibitors and organic leads synthesized by Dr. Deeb and Dr. Godzari with wild type and mutant strains of subtype B. Initially the structural feature of HIV-1 protease with the inhibitor complex has been anlysed on the basis of “Binding Energies”. Finally the fitness function in Genetic Algorithm was used for optimizing the inhibition of specific organic lead with three fold cross validation.

Analysis of drug resistance to HIV-1 protease using fitness function in genetic algorithm