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Cells are cognitive entities possessing great computational power. DNA serves as a multivalent information storage medium for these computations at various time scales. In- formation is stored in sequences, epigenetic modifications, and rapidly changing nucleoprotein complexes. Because DNA must operate through complexes formed with other molecules in the cell, genome functions are inherently interactive and involve two-way communication with various cellular com- partments. Both coding sequences (data files) and repetitive sequences (generic formatting signals) contribute to the hier- archical systemic organization of the genome. By virtue of nucleoprotein complexes, epigenetic modifications, and natu- ral genetic engineering activities, the genome can serve as a read-write storage system. An interactive informatic concep- tualization of the genome allows us to understand the func- tional importance of DNA that does not code for protein or RNA structure, clarifies the essential multidirectional and sys- temic nature of genomic information transfer, and emphasizes the need to investigate how cellular computation operates in reproduction and evolution.

Genome Informatics: The Role of DNA in Cellular Computations