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PCR-RFLP targeting of the 16S rDNA and  rpoB  genes, as well as the  vdc  region, was applied to identify and differentiate between the spoilage and non-spoilage  Alicyclobacillus  species. Eight reference strains and 75 strains isolated from spoiled juices, juice concentrates, drinks, its intermediates, and fresh apples were subject to study. Hin6I restriction patterns of the 16S rDNA gene enabled distinguishing between all the species analyzed, while the  rpoB  gene and  vdc  gene cluster analysis also revealed that there were two major types among the  A. acidoterrestris  isolates, one similar to the reference strain  A. acidoterrestris  DSM 2498, and the other similar to the reference strain  A. acidoterrestris  ATCC 49025. Heterogeneity was also observed among the  A. acidocaldarius  isolates. RFLP analysis of the 16S rDNA and  rpoB  genes, as well as  vdc  region, can be used successfully in the identification and research of intraspecies heterogeneity of the  Alicyclobacillus  species.

Genetic Heterogeneity ofAlicyclobacillusStrains Revealed by RFLP Analysis ofvdcRegion andrpoBGene