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This paper presents an integrated state-of-charge (SOC) estimation model and active cell balancing of a 12-cell lithium iron phosphate (LiFePO4) battery power system. The strong tracking cubature extended Kalman filter (STCEKF) gave an accurate SOC prediction compared to other Kalman-based filter algorithms. The proposed groupwise balancing of the multiple SOC exhibited a higher balancing speed and lower balancing loss than other cell balancing designs. The experimental results demonstrated the robustness and performance of the battery when subjected to current load profile of an electric vehicle under varying ambient temperature.