A Bayesian Approach to Determine the Composition of Heterogeneous Cancer Tissue
Author(s) -
Ashish Katiyar,
Anwoy Kumar Mohanty,
Chao Sima,
Jianping Hua,
Rosana Lopes,
Aniruddha Datta,
Michael Bittner
Publication year - 2017
Publication title -
digital access to scholarship at harvard (dash) (harvard university)
Language(s) - English
Resource type - Conference proceedings
DOI - 10.1145/3107411.3110410
Subject(s) - computer science , cancer , bayesian probability , scalability , cancer cell , artificial intelligence , medicine , database
Cancer Tissue Heterogeneity is an important consideration in cancer research as it can give insights into the causes and progression of cancer. It is known to play a significant role in cancer cell survival, growth and metastasis. Determining the compositional breakup of a heterogeneous cancer tissue can also help address the therapeutic challenges posed by heterogeneity. This necessitates a low cost, scalable algorithm to address the challenge of accurate estimation of the composition of a heterogeneous cancer tissue. In this paper, we propose an algorithm to tackle this problem by utilizing the data of accurate, but high cost, single cell line cell-by-cell observation methods in low cost ensemble observation method for heterogeneous cancer cell mixtures to obtain their composition in a Bayesian framework. The algorithm is analyzed and validated using synthetic data and experimental data obtained from mixtures of cancer cell lines.
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