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A study was undertaken to evaluate whether a parentage-based tagging (PBT) and genetic stock identification (GSI) program has the potential to emulate the results from an existing coded-wire tag (CWT) assessment program in British Columbia. A PBT/GSI approach was used to identify Chinook Salmon (Oncorhynchus tshawytscha) to specific populations and broodyears where 36,241 individuals from 45 populations were genotyped at 321 single nucleotide polymorphisms (SNPs). Known-origin and known-age age 1 juveniles from seven test populations were assigned via PBT (two-parental genotypes required, 538 of 656 juveniles assigned; one parental genotype required, 636 of 656 juveniles assigned) with a minimum accuracy of 99.9%. Assignment accuracy via PBT of 1,026 age 1, 2 or 3 Chinook Salmon returning to nine populations in 2015 or 2016 (two-parental genotypes required, 556 of 1,026 individuals assigned; one parental genotype required, 898 of 1,026 individuals assigned) was a minimum of 99.8%. A PBT/GSI or PBT system ...

canadian journal of fisheries and aquatic sciences

Population and individual identification of Chinook salmon in British Columbia through parentage-based tagging and genetic stock identification with single nucleotide polymorphisms