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Here, we present the draft genome sequence of Pseudomonas protegens strain BNJ-SS-45, which was isolated from wheat rhizosphere. The genome is assembled with 7,116,445 bp with a GC content of 63.34% consisting of 32 scaffolds. The genome is useful in prediction of secondary metabolites, particularly rhizoxin, pyoverdine, and bacteriocin.

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Draft Genome Sequence of the Plant Growth-Promoting Rhizobacterium Pseudomonas protegens Strain BNJ-SS-45, Isolated from Rhizosphere Soil of Wheat (Triticum aestivum)