Solibius ginsengiterrae gen. nov., sp. nov., isolated from soil of a ginseng field, and emended description of the genus Sediminibacterium and of Sediminibacterium salmoneum
Author(s) -
Yeon-Ju Kim,
Myung Kyum Kim,
Thi Phuong Nam Bui,
Ho-Bin Kim,
Sathiyaraj Srinivasan,
DeokChun Yang
Publication year - 2010
Publication title -
international journal of systematic and evolutionary microbiology
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 0.925
H-Index - 173
eISSN - 1466-5034
pISSN - 1466-5026
DOI - 10.1099/ijs.0.67457-0
Subject(s) - biology , ginseng , genus , microbiology and biotechnology , zoology , medicine , alternative medicine , pathology
A novel Gram-staining-negative bacterial strain, designated DCY13T, was isolated from soil of a ginseng field in Korea and characterized by using a polyphasic approach. The phylogenetic analysis based on 16S rRNA gene sequences revealed that strain DCY13T forms a cluster with members of the genera Sediminibacterium, Flavisolibacter, Niabella, Terrimonas, Niastella and Chitinophaga in the family 'Chitinophagaceae', phylum Bacteroidetes, and shares highest sequence similarity (95.2 %) with Sediminibacterium salmoneum NJ-44T. Sequence similarity with other members of the family is 87.6-91.4 %. Cells are non-spore-forming rods, catalase and oxidase-positive, motile by gliding that grow under strictly aerobic conditions. The predominant respiratory quinone is menaquinone MK-7, and the major fatty acids are anteiso-C15:0, iso C16:0, anteiso-C17:0, and iso-C15:0. The G+C content of the genomic DNA is 47.8 mol%. The major cell wall amino acids are D-aspartic acid, D-glycine, D-serine, L-lysine, D-glucosamine, and D-alanine. The major cell wall sugars are ribose, xylose, and galactose. The major polar lipids are phosphatidylethanolamine, phosphatidylglycerol, and diphosphatidylglycerol. It is proposed that strain DCY13T represents a novel genus and species in the family 'Chitinophagaceae' for which the name Solibius ginsengiterrae gen. nov., sp. nov., is proposed. The type strain is DCY13T (= KCTC 12833T = JCM 15794T). Emended descriptions of the genus Sediminibacterium and of S. salmoneum NJ44T are also proposed.
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