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Arbitrary primer polymerase chain reaction (AP-PCR) detected anonymous DNA polymorphisms between individual representatives of seven breeds of dogs, between members of a single breed, and between members of a single family of dogs. Short arbitrary sequence PCR primers and promoter/protein motif sequence primers typically amplified 15-30 bands ranging from 200-2000 bp in length. The average heterozygosity of 10 line bred Belgian sheepdogs (H = 0.024 +/- 0.011, mean +/- 95% CI) was significantly lower than that of a panel of unrelated beagles (H = 0.057 +/- 0.018, mean +/- 95% CI, P &lt; .01). The average heterozygosity of a seven-breed panel was intermediate between the two (H = 0.043 +/- 0.011, mean +/- 95% CI) and not significantly different than either panel. One motif sequence PCR primer pair yielded products that strongly differentiated between Belgian sheepdogs, beagles, and members of five other breeds. AP-PCR could be used to generate DNA fingerprints that distinguish between dog breeds, as well as to provide markers in this sparsely mapped genome.

Arbitrary Primer PCR of Dog DNA With Estimates of Average Heterozygosity