Synthesis of 2′,4′-BNACOC bearing a purine nucleobase
Author(s) -
Yasunori Mitsuoka,
Ryo Ohnishi,
Yoshiyuki Hari,
Satoshi Obika,
Takeshi Imanishi
Publication year - 2006
Publication title -
nucleic acids symposium series
Language(s) - English
Resource type - Journals
eISSN - 1746-8272
pISSN - 0261-3166
DOI - 10.1093/nass/nrl007
Subject(s) - nucleobase , pyrimidine , oligonucleotide , monomer , purine , chemistry , stereochemistry , nuclease , dna , combinatorial chemistry , biochemistry , organic chemistry , enzyme , polymer
Recently, we have synthesized pyrimidine derivatives of 2',4'-BNA(COC) monomer, the sugar conformation of which was restricted in N-form by a seven-membered bridged structure. The oligonucleotides containing these monomers showed high affinity with complementary single-stranded RNA and significant resistance to nuclease degradation. For an application to antisense methodology, it is important to synthesize 2',4'-BNA(COC) monomers bearing a purine nucleobase. However, the formation of methyleneoxymethylene (COC) linkage in the purine derivatives failed under the acidic conditions used for the synthesis of 2',4'-BNA(COC) with pyrimidine nucleobases. After several examinations, we successfully achieved the synthesis of 2',4'-BNA(COC) monomers bearing a purine nucleobase via the formation of COC linkage using Pummerer-type reaction.
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