Open AccessNew developments on the Encyclopedia of DNA Elements (ENCODE) data portal
Author(s) -
Yunhai Luo,
Benjamin C. Hitz,
Idan Gabdank,
Jason A. Hilton,
Meenakshi S. Kagda,
Bonita R. Lam,
Zachary Myers,
Paul Sud,
Jennifer Jou,
Khine Lin,
Ulugbek K. Baymuradov,
Keenan Graham,
Casey Litton,
Stuart R. Miyasato,
J. Seth Strattan,
Otto Jolanki,
Jin-Wook Lee,
Forrest Y. Tanaka,
Philip Adenekan,
Emma O’Neill,
J. Michael Cherry
Publication year - 2019
Publication title -
nucleic acids research
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 9.008
H-Index - 537
eISSN - 1362-4954
pISSN - 0305-1048
DOI - 10.1093/nar/gkz1062
Subject(s) - biology , encode , encyclopedia , computational biology , dna , genetics , library science , gene , computer science
The Encyclopedia of DNA Elements (ENCODE) is an ongoing collaborative research project aimed at identifying all the functional elements in the human and mouse genomes. Data generated by the ENCODE consortium are freely accessible at the ENCODE portal (https://www.encodeproject.org/), which is developed and maintained by the ENCODE Data Coordinating Center (DCC). Since the initial portal release in 2013, the ENCODE DCC has updated the portal to make ENCODE data more findable, accessible, interoperable and reusable. Here, we report on recent updates, including new ENCODE data and assays, ENCODE uniform data processing pipelines, new visualization tools, a dataset cart feature, unrestricted public access to ENCODE data on the cloud (Amazon Web Services open data registry, https://registry.opendata.aws/encode-project/) and more comprehensive tutorials and documentation.
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