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Recent studies found low test–retest reliability in functional magnetic resonance imaging (fMRI), raising serious concerns among researchers, but these studies mostly focused on the reliability of individual fMRI features (e.g., individual connections in resting state connectivity maps). Meanwhile, neuroimaging researchers increasingly employ multivariate predictive models that aggregate information across a large number of features to predict outcomes of interest, but the test–retest reliability of predicted outcomes of these models has not previously been systematically studied. Here we apply 10 predictive modeling methods to resting state connectivity maps from the Human Connectome Project dataset to predict 61 outcome variables. Compared with mean reliability of individual resting state connections, we find mean reliability of the predicted outcomes of predictive models is substantially higher for all 10 modeling methods assessed. Moreover, improvement was consistently observed across all scanning and processing choices (i.e., scan lengths, censoring thresholds, volume- vs. surface-based processing). For the most reliable methods, the reliability of predicted outcomes was mostly, though not exclusively, in the “good” range (above 0.60). Finally, we identified three mechanisms that help to explain why predicted outcomes of predictive models have higher reliability than individual imaging features. We conclude that researchers can potentially achieve higher test–retest reliability by making greater use of predictive models.

Boost in Test–Retest Reliability in Resting State fMRI with Predictive Modeling