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Predicting peptides that bind to both Major Histocompatibility Complex (MHC) molecules and T cell receptors provides crucial information for vaccine development. An agretope is that portion of a peptide that interacts with an MHC molecule. The identification and prediction of agretopes is the first step towards vaccine design.

Predicting class II MHC/peptide multi-level binding with an iterative stepwise discriminant analysis meta-algorithm