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Effects of relative orientation of the molecules on electron transport inmolecular devices are studied by non-equilibrium Green's function method basedon density functional theory. In particular, two molecular devices, with theplaner Au$_{7}$ and Ag$_{3}$ clusters sandwiched between the Al(100) electrodesare studied. In each device, two typical configurations with the clustersparallel and vertical to the electrodes are considered. It is found that therelative orientation affects the transport properties of these two devicescompletely differently. In the Al(100)-Au$_7$-Al(100) device, the conductanceand the current of the parallel configuration are much larger than those in thevertical configuration, while in the Al(100)-Ag$_{3}$-Al(100) device, anopposite conclusion is obtained

Effects of Relative Orientation of Molecules on Electron Transport in Molecular Devices