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The species of  Saussurea sagittifolia  Y. S. Chen &amp; S. R. Yi belongs to the family Asteraceae (Cardueae). The complete chloroplast genome of  S. sagittifolia  was assembled and annotated for the first time in this study. The complete chloroplast genome of  S. sagittifolia  was 152,535 bp, including a large single-copy (LSC) region of 83,511 bp, a small single-copy (SSC) region of 18,632 bp, and a pair of inverted repeats (IRs) of 25,196 bp. The overall GC content of the chloroplast genome was 37.7%. The chloroplast genome encoded 131 genes, including 87 protein-coding genes, 36 tRNA genes, and eight rRNA genes. Phylogenetic analysis based on complete chloroplast sequences revealed that it related closely to  Saussurea medusa .

Characterization and phylogenetic analysis of the complete chloroplast genome of Saussurea sagittifolia (Asteraceae, Cardueae)