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Cepola schlegelii  (Bleeker 1854) belongs to the genus  Cepola  in the family Cepolidae and order Priacanthiformes. The complete mitochondrial genome of  C. schlegelii  was sequenced and analyzed by a high-throughput sequencing approach. The full length of the genome is 17,020 bp, including 13 protein-coding genes (PCGs), 22 transfer RNA genes (tRNAs), two ribosomal RNA genes (rRNAs), and a non-coding control region (D-loop). Phylogenetic analysis based on complete mitochondrial genomes revealed that  C. schlegelii  was most closely related to  Acanthocepola krusensternii . The complete mitochondrial sequence of  C. schlegelii  will enrich the mitochondrial genome database and provide useful resources for population genetics and evolution analyses.

The complete mitochondrial genome of Cepola schlegelii from the East China Sea