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In this study, we first sequenced the mitochondrial genome (mitogenome) of  Schizothorax argentatus . The circular mitogenome of  S. argentatus  is 16,587 bp long, containing 13 protein-coding genes, 22 tRNA genes, two ribosomal RNA genes, and a control region (D-loop region). The base composition is AT biased (63.11%). A phylogenetic tree confirms monophyly at the genus level within Cyprinidae and supports  S. argentatus  as sister to  Schizothorax pseudoaksaiensis .

The mitochondrial genome of Schizothorax argentatus from Northern Xinjiang and its phylogenetic analysis