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Prunus  Linnaeus 1753 species include many economically important fruit crops, of which plumcot is generated by inter-species crossing between  Prunus salicina  Lindley 1830 ×  Prunus armeniaca  Linnaeus 1753. In this study, the complete chloroplast genome of Korean plumcot cultivar ‘Harmony’ was characterized through the  de novo  assembly of Nanopore and Illumina sequencing data. The chloroplast genome is a circular molecule of 157,916 bp length with 36.75% GC content and has a total of 113 genes including 79 protein-coding genes, 30 transfer RNA genes, and four ribosomal RNA genes. Phylogenetic analysis with protein-coding sequences of chloroplast genome revealed that ‘Harmony’ showed closer to  P .  salicina  than  P .  armeniaca.

The complete chloroplast genome of Korean cultivar ‘Harmony’ ( Prunus salicina × Prunus armeniaca )