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The complete mitochondrial genome sequence of  Omobranchus fasciolatoceps  was firstly described in this article. The total length of mitogenome was 16,569 bp. It contains 13 protein-coding genes, 22 tRNA genes, and two ribosomal RNA genes. The overall base composition of H-strand was 29.04% A, 27.14% C, 27.89% T, and 15.93% G, with an AT bias of 56.93%. The phylogenetic analysis results showed that the  O. fasciolatoceps  was most closely related to  O. elegans .

Complete mitochondrial genome of the top hat blenny, Omobranchus fasciolatoceps Richardson (Blenniiformes: Blenniinae) in Southern China Coast