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Polydora hoplura  Claparede 1868 (Polychaeta, Spionidae) is a mollusk shell-boring species which has been reported as a harmful species. In the present study, we sequenced and reported the mitochondrial genome (mitogenome) of  P. hoplura  from Korea. Its mitogenome was determined by long range PCR and primer walking. The mitogenome was found to be 17,707 bp in length and contained two ribosomal RNAs (rRNAs), 23 transfer RNAs (tRNAs), and 12 protein-coding genes which showed different gene arrangement with that in related mitogenomes of species of Sedentaria (Annelida). Interestingly, the  atp 8 gene was not found in the mitogenome of  P. hoplura , whereas it is present in the mitogenomes of related species  P. brevipalpa  and  P. websteri . Moreover,  nad 2 (3’ end) and  cox 1 (5’ end) genes overlapped in 23 bases. The mitogenome structure and gene contents of  P. hoplura  provide useful information on the evolution and phylogenetic relationship among polychaete species.

Complete mitochondrial genome of the abalone shell-boring Polydora hoplura (Polychaeta, Spionidae)