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Self-incompatibility in radish ( Raphanus sativus  L.) is controlled by the  S  haplotype consisting of three tightly linked genes:  SRK, SCR/SP11 , and  SLG . Since many radish  S  haplotypes have been reported with different nomenclature by several research groups, such discrepancy has resulted in confusion. To integrate  S  haplotypes identified in previous studies of Korean radish breeding lines into a unified nomenclature system, the nucleotide sequences of  SRK  and  SLG  genes isolated by different research groups were compared with each other. Two radish accessions whose draft whole-genome sequences were previously reported were shown to harbour class II  RsS-9  and class I  RsS-19  haplotypes, respectively. Nucleotide sequences of  SLG  and  S  domains of  SRK  genes were obtained from diverse breeding lines using four degenerate and 13 haplotype-specific primer pairs. A total of 27 out of 31  S  haplotypes isolated in our previous study showed that  SRK  and  SLG  sequences were almost identical to those reported by other research groups. In addition, eight novel putative  SRK  or  SLG  sequences showing high homology with other  SRK  genes were identified. Finally, 27  S  haplotypes were successfully integrated into the unified nomenclature, and the four  S  haplotypes containing unique sequences were renamed following the unified nomenclature.

Integration of Korean S haplotypes controlling self-incompatibility into the unified nomenclature in radish ( Raphanus sativus L.)