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A new freshwater benthic diatom  Amphora baotuensis  is described from a karst spring in China, based on morphological and molecular phylogenetic data. Based on SSU rRNA and  rbc L sequences the molecular phylogeny indicates that this species is closely related to  A. copulata  (Kützing) Schoeman &amp; Archibald within the  Amphora sensu stricto  clade.  Amphora baotuensis  differs from congeners by a combination of morphological features including smaller cell size, a wide, rectangular to fan-shaped dorsal fascia, a well-developed raphe ledge on the ventral side and uniseriate ventral striae.

Morphology and molecular phylogeny of Amphora baotuensis sp. nov., a new freshwater benthic diatom from a karst spring in China