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Species in the genus  Suaeda  have few diagnostic characters and substantial morphological plasticity. Hence, regional floras do not provide clear taxonomic information for  Suaeda  spp. in East Asia. In order to assess the taxonomy of four species in the genus  Suaeda  ( S .  australis ,  S .  maritima ,  S .  japonica , and  S .  heteroptera ), cpDNA ( rpl32 - trnL  and  trnH - psbA ), nDNA (ITS), and MIG-seq analyses were carried out. Genome-wide SNP results indicated three lineages: (1)  S .  australis  in Korea and  S .  maritima  in Japan, (2)  S .  maritima  in Korea and  S .  heteroptera  in China ,  and (3)  S .  japionica . In phylogenetic trees and genotype analyses, cpDNA and nDNA results showed discrepancies, while  S .  japonica  and  S .  maritima  in Korea, and  S .  heteroptera  in China shared the same haplotype and ribotype. We suggest that the shared haplotype may be due to chloroplast capture. Based on our results, we assume that  S .  japonica  was formed by homoploid hybrid speciation between the two lineages.

Insights into genomic structure and evolutionary processes of coastal Suaeda species in East Asia using cpDNA, nDNA, and genome-wide SNPs