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In this work, a total of 72 samples of non-thermally treated commercial table olives were obtained from different markets of the world. Then, prokaryotic diversity in olive biofilms was investigated by metataxonomic analysis. A total of 660 different OTUs were obtained, belonging to Archaea (2.12%) and Bacteria domains (97.88%). From these, 41 OTUs with a proportion of sequences ≥ 0.01% were studied by compositional data analysis. Only two genera were found in all samples,  Lactobacillus , which was the predominant bacteria in the biofilm consortium (median 54.99%), and  Pediococcus  (26.09%).  Celerinatantimonas ,  Leuconostoc, Alkalibacterium, Pseudomonas, Marinilactibacillus ,  Weissella,  and the family  Enterobacteriaceae  were also present in at least 80% of samples. Regarding foodborne pathogens, only  Enterobacteriaceae, Vibrio,  and  Staphylococcus  were detected in at least 91.66%, 75.00%, and 54.10% of samples, respectively, but their median values were always below 0.15%. Compositional data analysis allowed discriminating between lye treated and natural olive samples, as well as between olives packaged in glass, PET and plastic bags.  Leuconostoc, Celerinatantimonas,  and  Alkalibacterium  were the bacteria genera with a higher discriminant power among samples. These results expand our knowledge of the bacteria diversity in olive biofilms, providing information about the sanitary and hygienic status of this ready-to-eat fermented vegetable.

Exploring bacteria diversity in commercialized table olive biofilms by metataxonomic and compositional data analysis