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Vibrio parahaemolyticus  is a major foodborne pathogen worldwide. The increasing number of cases of  V. parahaemolyticus  infections in China indicates an urgent need to evaluate the prevalence and genetic diversity of this pathogenic bacterium. In this paper, we introduce the Foodborne  Vibrio parahaemolyticus  genome database (FVPGD), the first scientific database of foodborne  V. parahaemolyticus  distribution and genomic data in China, based on our previous investigations of  V. parahaemolyticus  contamination in different kinds of food samples across China from 2011 to 2016. The dataset includes records of 2,499 food samples and 643  V. parahaemolyticus  strains from supermarkets and marketplaces distributed over 39 cities in China; 268 whole-genome sequences have been deposited in this database. A spatial view on the risk situations  of V. parahaemolyticus  contamination in different food types is provided. Additionally, the database provides a functional interface of sequence BLAST, core genome multilocus sequence typing, and phylogenetic analysis. The database will become a powerful tool for risk assessment and outbreak investigations of foodborne pathogens in China.

A database for risk assessment and comparative genomic analysis of foodborne Vibrio parahaemolyticus in China