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Although influenza viruses lead to severe illness in high-risk populations, host genetic factors associated with severe disease are largely unknown. As the HLA-A*68:01 allele can be linked to severe pandemic 2009-H1N1 disease, we investigate a potential impairment of HLA-A*68:01-restricted CD8 +  T cells to mount robust responses. We elucidate the HLA-A*68:01 + CD8 +  T cell response directed toward an extended influenza-derived nucleoprotein (NP) peptide and show that only ~35% individuals have immunodominant A68/NP 145  + CD8 +  T cell responses. Dissecting A68/NP 145  + CD8 +  T cells in low vs. medium/high responders reveals that high responding donors have A68/NP 145  + CD8 +  memory T cells with clonally expanded TCRαβs, while low-responders display A68/NP 145  + CD8 +  T cells with predominantly naïve phenotypes and non-expanded TCRαβs. Single-cell index sorting and TCRαβ analyses link expansion of A68/NP 145  + CD8 +  T cells to their memory potential. Our study demonstrates the immunodominance potential of influenza-specific CD8 +  T cells presented by a risk HLA-A*68:01 molecule and advocates for priming CD8 +  T cell compartments in HLA-A*68:01-expressing individuals for establishment of pre-existing protective memory T cell pools.

Challenging immunodominance of influenza-specific CD8+ T cell responses restricted by the risk-associated HLA-A*68:01 allomorph