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Nat. Methods 12, 1179–1184 (2015); published online 28 September 2015; corrected after print 17 February 2017 In the version of this article initially published, the number of interprotein cross-links was overstated, as protein grouping during cross-link categorization was not properly considered. 314 intraprotein cross-links were mistakenly annotated as interprotein cross-links if shared peptides between different protein entries were involved.

Erratum: Corrigendum: Proteome-wide profiling of protein assemblies by cross-linking mass spectrometry